If my finger prints are found at a crime scene, can I get in trouble for the same crime as the suspect?

After he was convicted, he can raise the fact that evidence existed that he was innocent and someone else committed the crime. He would do this in his post conviction petition and appeal to higher courts. It may or may not result in him getting a new trial, however, it is a real uphill battle for him. If he is vindicated, and granted a new trial, whether or not the DA chooses to prosecute you, is another issue. If this is your question, then my opinion is that the DA is unlikely to file the same charges against you as it will reinforce the fact that the DA made a mistake and open up greater civil liability against the DA's office.