Will I ever get a green card or get deported if as of now, I don't have any criminal record?

I am 37. I came on F1 visa in 2007 but didn't go to school as per F1, rather I got employed and subsequently tried to AOS via employer based green card in 2008. I140 was denied. Now, currently I am married to a US citizen wife and we have 2 kids. When I applied at AOS via marriage at the green card interview, I was shocked as the officer mentioned that I have a pending removal proceeding order in 2010 so she didn't approved the green card. But now, I have a work permit and letter stating that I130 is approved and my petition is send to NVC. I am confused as how I can AOS my status. I want the green card. I want to visit my parents in India.